Laboratory of Mitochondrial Medicine



Neurodegenerative diseases (Alzheimer’s, Parkinson’s, Huntington’s etc.) represent an increasing threat to public health in addition to their assault upon the lives of patients and their families. In most cases, the pathogenesis of these diseases has remained obscure and treatment strategies inadequate. However, recent lines of evidence suggest strong mitochondrial involvement in these diseases – defects in mitochondrial autophagy, dynamics or/and biogenesis have now been recognized as clearly associated with the pathogenesis of these diseases. We would like to further study some of these links and to determine whether these pathways could be used activate neuronal repair mechanisms. Thus, we expect that we will contribute to the common goal of uncovering the neurobiological basis of neurodegenerative diseases and may help to uncover, in the longer run, new treatments for with neurodegenerative diseases.


Specific research topics

  • Mitochondrial dysfunction in axonal damage
  • Mitochondria in pathophysiology of Wolfram Syndrome
  • The role of Keap1 in mitophagy



  • Professor Allen Kaasik 
  • Associate Professor Annika Vaarmann
  • Associate Professor Džamilja Safiulina
  • Associate Professor Vinay Choubey 
  • Lecturer/Research Fellow Malle Kuum
  • PhD student/Specialist Nana Gogichaisvili 
  • PhD student/Junior Research Fellow Ruby Gupta Blixt
  • PhD student/Specialist Liisa Tammsaar-Meus



  • Safiulina D, Kuum M, Choubey V, Hickey MA, Kaasik A. Mitochondrial transport proteins RHOT1 and RHOT2 serve as docking sites for PRKN-mediated mitophagy. Autophagy. 2019 May;15(5):930-931.
  • Safiulina D, Kuum M, Choubey V, Gogichaishvili N, Liiv J, Hickey MA, Cagalinec M, Mandel M, Zeb A, Liiv M, Kaasik A. Miro proteins prime mitochondria for Parkin translocation and mitophagy. EMBO J. 2019 Jan 15;38(2). pii: e99384.
  • Kaasik A. Mitochondrial Mobility and Neuronal Recovery. N Engl J Med. 2016 Sep 29;375(13):1295-6.
  • Cagalinec M, Liiv M, Hodurova Z, Hickey MA, Vaarmann A, Mandel M, Zeb A, Choubey V, Kuum M, Safiulina D, Vasar E, Veksler V, Kaasik A. Role of Mitochondrial Dynamics in Neuronal Development: Mechanism for Wolfram Syndrome. PLoS Biol. 2016 Jul 19;14(7):e1002511.
  • Vaarmann A, Mandel M, Zeb A, Wareski P, Liiv J, Kuum M, Antsov E, Liiv M, Cagalinec M, Choubey V, Kaasik A. Mitochondrial biogenesis is required for axonal growth. Development. 2016 Jun 1;143(11):1981-92.

Career conference „To new hights with a PhD degree!“

Teaduskonverentsi publik

Call for abstracts: scientific conference celebrating the anniversary of the Faculty of Medicine

 Tartu Ülikooli bio- ja siirdemeditsiini instituudi inimese geneetika õppetooli uuring koostöös Tartu Ülikooli Kliinikumi meestekliinikuga näitas, et üllatavalt suurel osal viljatutest meestest on lapsena diagnoositud munandi laskumishäire. Õigeaegne sekkumine aitab tulevikus lahendada viljatusprobleeme ja ennetada haruldaste kasvajate riski.

Testicular maldescent in infertile men may be a sign of a more severe genetic syndrome